STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_0423KEGG: gem:GM21_0326 hypothetical protein. (310 aa)    
Predicted Functional Partners:
GM18_1319
PFAM: glycosyltransferase 36; carbohydrate binding; glycosyltransferase 36 associated; KEGG: gur:Gura_4340 glycosyltransferase 36.
  
  
 0.566
GM18_0424
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: gem:GM21_0327 endonuclease/exonuclease/phosphatase.
       0.526
GM18_0646
PFAM: glycosyl transferase family 2; KEGG: gem:GM21_3517 hypothetical protein.
  
  
 0.524
GM18_1661
PFAM: glycosyl transferase family 2; KEGG: gur:Gura_2330 glycosyl transferase family protein.
  
  
 0.524
GM18_3436
TIGRFAM: hopanoid biosynthesis associated glycosyl transferase protein HpnI; KEGG: gbm:Gbem_3357 ceramide glucosyltransferase, putative; PFAM: glycosyl transferase family 2.
  
  
 0.524
GM18_0903
KEGG: gem:GM21_3195 transferase hexapeptide repeat protein.
 
     0.495
recB
Exodeoxyribonuclease V, beta subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and re [...]
       0.418
GM18_3203
PFAM: NapC/NirT cytochrome c domain protein; KEGG: gbm:Gbem_3199 hypothetical protein.
  
     0.410
recC
Exodeoxyribonuclease V, gamma subunit; A helicase/nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and r [...]
       0.408
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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