STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_0467KEGG: tin:Tint_0432 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. (314 aa)    
Predicted Functional Partners:
GM18_0464
PFAM: ABC-2 type transporter; KEGG: rfr:Rfer_0857 hypothetical protein.
  
 0.997
GM18_0465
PFAM: ABC-2 type transporter; KEGG: tin:Tint_0434 ABC-2 type transporter.
  
 0.997
GM18_0468
PFAM: secretion protein HlyD family protein; KEGG: gme:Gmet_0659 secretion protein HlyD.
 
  
 0.955
GM18_2743
PFAM: ABC-2 type transporter; KEGG: deg:DehalGT_0682 ABC-2 type transporter.
 
  
 0.829
GM18_0466
KEGG: rfr:Rfer_0859 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase.
 
    
0.791
GM18_0469
PFAM: outer membrane efflux protein; KEGG: sus:Acid_5987 outer membrane efflux protein.
     
 0.733
GM18_0470
PFAM: regulatory protein TetR; KEGG: pjd:Pjdr2_2781 transcriptional regulator, TetR family.
     
 0.676
GM18_0739
Lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
0.549
GM18_0013
PFAM: ABC-2 type transporter; KEGG: gem:GM21_0013 ABC-2 type transporter.
  
  
 0.548
atpD
ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits; Belongs to the ATPase alpha/beta chains family.
    
 
 0.542
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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