STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_0595KEGG: gem:GM21_3559 hypothetical protein. (315 aa)    
Predicted Functional Partners:
GM18_0594
KEGG: gem:GM21_3560 hypothetical protein.
       0.773
GM18_0596
PFAM: cytochrome c assembly protein; KEGG: gem:GM21_3558 cytochrome c assembly protein.
       0.615
GM18_0597
KEGG: gem:GM21_3557 ResB-like protein required for cytochrome c biosynthesis.
      
0.607
GM18_0598
KEGG: gem:GM21_3556 radical SAM domain protein; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB.
       0.484
GM18_0593
SMART: Fibronectin type III domain protein; KEGG: gem:GM21_3561 fibronectin type III domain protein.
       0.455
GM18_0592
KEGG: gem:GM21_3562 filamentous hemeagglutinin outer membrane protein.
       0.442
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.