STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_0787KEGG: gem:GM21_3157 cytochrome c family protein. (286 aa)    
Predicted Functional Partners:
GM18_1019
KEGG: gsu:GSU3223 cytochrome c family protein.
 
 
 0.862
GM18_0930
TIGRFAM: cytochrome C family protein; KEGG: gem:GM21_3163 cytochrome c family protein.
 
 
 0.860
GM18_1016
TIGRFAM: cytochrome C family protein; KEGG: gur:Gura_2759 cytochrome c family protein.
 
 
 0.859
GM18_0645
KEGG: gem:GM21_3518 cytochrome c family protein.
 
 
 0.851
GM18_0932
KEGG: gem:GM21_3161 cytochrome c family protein.
 
 
 0.839
GM18_3636
KEGG: gem:GM21_0729 hypothetical protein.
 
 
 0.765
GM18_0920
KEGG: gem:GM21_3175 cytochrome c family protein.
  
   
 0.728
GM18_0931
PFAM: NHL repeat containing protein; KEGG: gur:Gura_2758 NHL repeat-containing protein.
 
     0.723
GM18_1018
KEGG: gem:GM21_3112 NHL repeat containing protein.
 
     0.718
GM18_3203
PFAM: NapC/NirT cytochrome c domain protein; KEGG: gbm:Gbem_3199 hypothetical protein.
 
 
 0.714
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.