STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_0901KEGG: gem:GM21_3197 undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase. (377 aa)    
Predicted Functional Partners:
GM18_2249
TIGRFAM: capsular exopolysaccharide family; KEGG: gur:Gura_1670 non-specific protein-tyrosine kinase; PFAM: lipopolysaccharide biosynthesis protein.
 
  
 0.939
GM18_2483
PFAM: glycosyl transferase family 2; KEGG: gem:GM21_1645 glycosyl transferase family 2.
  
  
 0.923
GM18_3421
PFAM: Nucleotidyl transferase; mannose-6-phosphate isomerase type II; KEGG: gbm:Gbem_3342 Nucleotidyl transferase.
  
  
 0.862
mnmE
tRNA modification GTPase TrmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
   
    0.845
GM18_1639
KEGG: gem:GM21_2476 capsular exopolysaccharide family; TIGRFAM: capsular exopolysaccharide family.
 
  
 0.840
GM18_1089
Multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold domain protein; Cache domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: gbm:Gbem_1227 multi-sensor hybrid histidine kinase; SMART: ATP-binding region ATPase domain protein; response regulator receiver; PAS domain containing protein; PAC repeat-containing protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; Hpt domain protein.
  
 
 0.819
GM18_0906
PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: gem:GM21_3192 polysaccharide export protein.
 
  
 0.811
GM18_1594
Hypothetical protein; KEGG: gme:Gmet_1447 chromosome partitioning ATPase.
 
  
 0.811
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.786
GM18_0217
KEGG: gem:GM21_0057 histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein.
  
 
 0.774
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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