STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_1437PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bpa:BPP0122 DegT/DnrJ/EryC1/StrS aminotransferase family protein; Belongs to the DegT/DnrJ/EryC1 family. (383 aa)    
Predicted Functional Partners:
GM18_1436
PFAM: NAD-dependent epimerase/dehydratase; KEGG: bbr:BB0121 NAD dependent epimerase/dehydratase family protein.
  
 0.856
GM18_1433
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: saf:SULAZ_0344 oxidoreductase domain protein.
  
  
 0.828
GM18_1441
TIGRFAM: N-acetyl sugar amidotransferase; KEGG: abu:Abu_0670 putative LPS biosynthesis protein WbpG.
  
  
 0.817
GM18_1439
PFAM: Methyltransferase type 11; KEGG: cbc:CbuK_0702 methyltransferase.
 
     0.810
GM18_2240
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: gur:Gura_3177 undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase.
 
  
 0.802
GM18_1434
KEGG: glo:Glov_1509 transferase hexapeptide repeat containing protein.
     0.797
GM18_1445
PFAM: polysaccharide biosynthesis protein; KEGG: gfo:GFO_3263 polysaccharide biosynthesis protein.
  
  
 0.792
GM18_1438
TIGRFAM: asparagine synthase (glutamine-hydrolyzing); KEGG: swo:Swol_0712 putative asparagine synthetase; PFAM: asparagine synthase.
  
    0.779
GM18_1443
Histidine biosynthesis protein; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
  
    0.777
GM18_0902
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: gem:GM21_3196 oxidoreductase domain protein.
  
 0.773
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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