STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_1575PFAM: polysaccharide biosynthesis protein; KEGG: mac:MA4461 polysaccharide biosynthesis protein. (494 aa)    
Predicted Functional Partners:
GM18_1573
PFAM: polysaccharide deacetylase; KEGG: nde:NIDE2698 hypothetical protein.
 
   
 0.920
GM18_1577
PFAM: glycosyl transferase group 1; KEGG: rxy:Rxyl_3107 glycosyl transferase, group 1.
 
  
 0.911
GM18_1572
Hypothetical protein; KEGG: tkm:TK90_2511 FemAB-related protein, PEP-Cterm system-associated.
 
     0.900
GM18_1576
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; amine oxidase; KEGG: nde:NIDE3419 putative amine oxidase.
 
  
 0.839
GM18_1580
PFAM: glycosyl transferase group 1; KEGG: rce:RC1_2571 glycosyl transferase, putative.
  
  
 0.812
GM18_1942
TIGRFAM: nucleotide sugar dehydrogenase; KEGG: gem:GM21_1936 nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase dimerisation.
  
  
 0.791
GM18_3424
KEGG: gem:GM21_0899 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.790
GM18_2321
PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: gem:GM21_1754 dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like protein.
  
  
 0.788
GM18_2240
TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; KEGG: gur:Gura_3177 undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase.
  
  
 0.781
GM18_1579
PFAM: glycosyl transferase family 2; KEGG: cac:CA_C2312 rhamnosyl transferase, RfbQ.
  
  
 0.747
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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