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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_1663PFAM: Fibronectin type III domain protein; KEGG: gur:Gura_2327 fibronectin, type III domain-containing protein. (378 aa)    
Predicted Functional Partners:
GM18_2350
PFAM: surface antigen (D15); Lipoprotein LpqB, beta-propeller domain-like; WD40-like beta Propeller containing protein; KEGG: gbm:Gbem_2492 peptidase S9B dipeptidylpeptidase IV domain protein.
  
 
 0.916
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.872
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.857
GM18_4201
PFAM: surface antigen (D15); KEGG: gur:Gura_4112 surface antigen (D15).
  
 
 0.857
GM18_2615
TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: gbm:Gbem_2749 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF domain protein.
   
  
 0.538
GM18_1665
Hypothetical protein; KEGG: gur:Gura_2327 fibronectin, type III domain-containing protein.
 
    
0.518
GM18_4317
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; proteinase inhibitor I9 subtilisin propeptide; KEGG: msv:Mesil_1816 peptidase S8 and S53 subtilisin kexin sedolisin.
  
 0.514
GM18_1661
PFAM: glycosyl transferase family 2; KEGG: gur:Gura_2330 glycosyl transferase family protein.
 
     0.503
GM18_0165
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; SurA domain; KEGG: gem:GM21_0199 PpiC-type peptidyl-prolyl cis-trans isomerase.
   
 
 0.493
GM18_0166
PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: gbm:Gbem_0215 PpiC-type peptidyl-prolyl cis-trans isomerase.
   
 
 0.493
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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