Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GM18_1663PFAM: Fibronectin type III domain protein; KEGG: gur:Gura_2327 fibronectin, type III domain-containing protein. (378 aa)    
Predicted Functional Partners:
GM18_2350
PFAM: surface antigen (D15); Lipoprotein LpqB, beta-propeller domain-like; WD40-like beta Propeller containing protein; KEGG: gbm:Gbem_2492 peptidase S9B dipeptidylpeptidase IV domain protein.
  
 0.952
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 0.951
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 0.924
GM18_4201
PFAM: surface antigen (D15); KEGG: gur:Gura_4112 surface antigen (D15).
  
 0.924
GM18_3597
KEGG: gbm:Gbem_0752 hypothetical protein.
   
 
 0.648
GM18_0785
PFAM: FKBP-type peptidyl-prolyl isomerase domain protein; peptidylprolyl isomerase FKBP-type; KEGG: pca:Pcar_0774 FKBP-type peptidyl-prolyl cis-trans isomerase.
   
 
 0.543
GM18_2197
KEGG: gbm:Gbem_2004 peptidylprolyl isomerase FKBP-type; PFAM: peptidylprolyl isomerase FKBP-type; FKBP-type peptidyl-prolyl isomerase domain protein.
   
 
 0.543
GM18_3490
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gbm:Gbem_1005 peptidylprolyl isomerase FKBP-type.
   
 
 0.543
GM18_2615
TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; KEGG: gbm:Gbem_2749 membrane-associated zinc metalloprotease; SMART: PDZ/DHR/GLGF domain protein.
   
    0.537
GM18_3533
KEGG: gur:Gura_2022 fibronectin, type III domain-containing protein; PFAM: Fibronectin type III domain protein; SMART: Fibronectin type III domain protein.
 
  
 0.526
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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