STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_2139PFAM: outer membrane chaperone Skp (OmpH); KEGG: gbm:Gbem_2093 outer membrane chaperone Skp (OmpH). (206 aa)    
Predicted Functional Partners:
GM18_2563
KEGG: gem:GM21_1545 surface antigen msp4 family protein.
    
 
 0.720
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
 
  
 0.703
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
  
  
 0.695
GM18_4201
PFAM: surface antigen (D15); KEGG: gur:Gura_4112 surface antigen (D15).
 
  
 0.686
GM18_1384
KEGG: gbm:Gbem_1549 putative type IV pilus assembly protein PilP.
  
     0.643
GM18_2350
PFAM: surface antigen (D15); Lipoprotein LpqB, beta-propeller domain-like; WD40-like beta Propeller containing protein; KEGG: gbm:Gbem_2492 peptidase S9B dipeptidylpeptidase IV domain protein.
  
  
 0.628
GM18_0757
KEGG: gem:GM21_3392 lipopolysaccharide transport periplasmic protein LptA; TIGRFAM: lipopolysaccharide transport periplasmic protein LptA; PFAM: OstA family protein.
  
    0.623
GM18_0796
PFAM: AsmA family protein; KEGG: gbm:Gbem_0899 AsmA family protein.
  
     0.604
GM18_3733
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
   
 0.601
GM18_1555
PFAM: outer membrane chaperone Skp (OmpH); KEGG: glo:Glov_0761 outer membrane chaperone Skp (OmpH).
  
     0.595
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.