STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_2337PFAM: LemA family protein; KEGG: gem:GM21_1740 LemA family protein. (197 aa)    
Predicted Functional Partners:
GM18_2338
PFAM: peptidase M48 Ste24p; KEGG: gem:GM21_1739 peptidase M48 Ste24p.
 
    0.920
GM18_2339
KEGG: bba:Bd2032 hypothetical protein.
  
    0.768
GM18_2340
PFAM: major facilitator superfamily MFS_1; KEGG: gem:GM21_1741 major facilitator superfamily MFS_1.
  
  
 0.678
GM18_2278
PFAM: protein of unknown function DUF477; KEGG: gem:GM21_1795 protein of unknown function DUF477.
 
    0.600
GM18_2342
PFAM: protein of unknown function DUF6 transmembrane; KEGG: amr:AM1_5900 carboxylate/amino acid/amine transporter, putative.
       0.502
GM18_2341
PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_2482 major facilitator superfamily MFS_1.
       0.500
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.