STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_2492KEGG: gem:GM21_1636 pilin domain-containing protein. (74 aa)    
Predicted Functional Partners:
GM18_1376
KEGG: gem:GM21_2674 hypothetical protein.
  
  
 0.783
GM18_1381
TIGRFAM: type IV pilus assembly protein PilM; KEGG: gem:GM21_2669 type IV pilus assembly protein PilM.
 
   
 0.736
GM18_2495
PFAM: Type II secretion system F domain; KEGG: gbm:Gbem_2593 type II secretion system protein.
 
   
 0.725
GM18_2491
KEGG: gem:GM21_1637 hypothetical protein.
       0.691
GM18_2496
KEGG: gbm:Gbem_2594 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E.
 
   
 0.662
GM18_1232
KEGG: gem:GM21_2913 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein.
  
  
 0.645
GM18_1371
KEGG: gbm:Gbem_1536 Tfp pilus assembly protein tip-associated adhesin PilY1-like protein.
  
  
 0.645
GM18_1374
KEGG: gbm:Gbem_1539 hypothetical protein.
  
  
 0.620
GM18_1378
KEGG: gem:GM21_2672 hypothetical protein.
  
  
 0.620
GM18_3318
KEGG: dbr:Deba_3287 hypothetical protein.
  
  
 0.603
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.