STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_3091KEGG: gbm:Gbem_3120 hypothetical protein. (144 aa)    
Predicted Functional Partners:
GM18_3092
SMART: CoA-binding domain protein; KEGG: gem:GM21_1141 CoA-binding domain protein.
       0.639
GM18_3093
KEGG: gem:GM21_1140 hypothetical protein.
       0.512
GM18_3094
KEGG: gbm:Gbem_3123 TPR repeat-containing protein.
       0.503
GM18_3095
KEGG: gbm:Gbem_3125 histone deacetylase superfamily; PFAM: histone deacetylase superfamily.
       0.465
GM18_3089
TIGRFAM: decaheme c-type cytochrome, DmsE family; cytochrome C family protein; KEGG: gem:GM21_1144 cytochrome c family protein.
       0.452
GM18_3090
KEGG: gbm:Gbem_3119 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.452
GM18_3086
KEGG: gbm:Gbem_3115 response regulator receiver protein; PFAM: response regulator receiver; SMART: response regulator receiver.
       0.445
GM18_3088
KEGG: gbm:Gbem_3117 hypothetical protein.
       0.439
GM18_3087
KEGG: gbm:Gbem_3116 protein of unknown function DUF534; manually curated; PFAM: protein of unknown function DUF534.
       0.426
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.