STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_3108PFAM: Polysulphide reductase NrfD; KEGG: gbm:Gbem_3137 putative hydrogenase 2 b cytochrome subunit. (447 aa)    
Predicted Functional Partners:
GM18_3109
KEGG: gbm:Gbem_3138 hydrogenase 2 protein HybA.
 
 0.998
GM18_3110
TIGRFAM: hydrogenase (NiFe) small subunit HydA; KEGG: gem:GM21_1123 hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit.
 
  
 0.990
GM18_3107
KEGG: gbm:Gbem_3136 nickel-dependent hydrogenase large subunit; PFAM: nickel-dependent hydrogenase large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
  
 0.984
GM18_3106
KEGG: gbm:Gbem_3135 hydrogenase maturation protease; TIGRFAM: hydrogenase maturation protease; PFAM: peptidase M52 hydrogen uptake protein.
 
  
 0.976
GM18_3947
KEGG: gur:Gura_2776 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
 
 0.971
GM18_1963
KEGG: gbm:Gbem_2266 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 0.915
GM18_3690
KEGG: gbm:Gbem_0665 4Fe-4S ferredoxin iron-sulfur binding domain protein.
 
 0.905
tatA-5
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
  
 0.896
tatA-3
Twin-arginine translocation protein, TatA/E family subunit; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system.
  
  
 0.855
GM18_1820
KEGG: geo:Geob_0084 Fe-S-cluster-containing hydrogenase components 2-like protein.
 
 
 0.842
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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