Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
GM18_3203PFAM: NapC/NirT cytochrome c domain protein; KEGG: gbm:Gbem_3199 hypothetical protein. (507 aa)    
Predicted Functional Partners:
GM18_3947
KEGG: gur:Gura_2776 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
 0.779
GM18_1964
PFAM: Polysulphide reductase NrfD; KEGG: gbm:Gbem_2265 Polysulphide reductase NrfD.
 
   
 0.726
GM18_3946
KEGG: gur:Gura_2777 nitrate reductase; PFAM: molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.684
GM18_4303
KEGG: gbm:Gbem_0057 hypothetical protein.
  
     0.656
GM18_0920
KEGG: gem:GM21_3175 cytochrome c family protein.
 
   
 0.652
GM18_3459
TIGRFAM: decaheme c-type cytochrome, OmcA/MtrC family; KEGG: glo:Glov_2292 hypothetical protein.
 
 
 0.649
GM18_3465
TIGRFAM: decaheme c-type cytochrome, OmcA/MtrC family; KEGG: rfr:Rfer_1713 hypothetical protein.
 
 
 0.649
GM18_1828
PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: dma:DMR_26720 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.642
GM18_1833
PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase; molybdopterin oxidoreductase Fe4S4 region; KEGG: dma:DMR_26720 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.642
GM18_2394
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: geo:Geob_1352 molybdopterin oxidoreductase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.642
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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