STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_3281PFAM: protein of unknown function DUF523; KEGG: gbm:Gbem_3230 Protein of unknown function DUF1722. (187 aa)    
Predicted Functional Partners:
GM18_0695
KEGG: gem:GM21_3467 GAF sensor signal transduction histidine kinase; PFAM: histidine kinase A domain protein; GAF domain protein; ATP-binding region ATPase domain protein; SMART: GAF domain protein; histidine kinase A domain protein.
   
    0.936
GM18_3280
PFAM: protein of unknown function DUF224 cysteine-rich region domain protein; Nitrate reductase gamma subunit; KEGG: gem:GM21_1035 protein of unknown function DUF224 cysteine-rich region domain protein.
       0.580
GM18_3282
Hypothetical protein.
       0.543
GM18_3979
KEGG: alv:Alvin_0940 cyclopropane-fatty-acyl-phospholipid synthase; PFAM: Cyclopropane-fatty-acyl-phospholipid synthase.
     
 0.534
GM18_2372
PFAM: monooxygenase FAD-binding; KEGG: gbm:Gbem_2514 FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
   0.510
GM18_4135
KEGG: gbm:Gbem_3686 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
   
   0.510
GM18_0284
PFAM: SpoVR family protein; KEGG: gbm:Gbem_0255 SpoVR-like family protein.
   
    0.480
GM18_0331
Trehalose-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.454
GM18_0614
KEGG: gbm:Gbem_1158 hypothetical protein.
   
    0.447
GM18_2001
KEGG: gbm:Gbem_2227 hypothetical protein.
   
    0.447
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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