Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GM18_3390 | GM18_3391 | GM18_3390 | GM18_3391 | KEGG: gbm:Gbem_3311 NAD(P)H quinone oxidoreductase, PIG3 family; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. | KEGG: gbm:Gbem_3312 hypothetical protein. | 0.497 |
GM18_3391 | GM18_3390 | GM18_3391 | GM18_3390 | KEGG: gbm:Gbem_3312 hypothetical protein. | KEGG: gbm:Gbem_3311 NAD(P)H quinone oxidoreductase, PIG3 family; TIGRFAM: NAD(P)H quinone oxidoreductase, PIG3 family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein. | 0.497 |
GM18_3391 | GM18_3392 | GM18_3391 | GM18_3392 | KEGG: gbm:Gbem_3312 hypothetical protein. | PFAM: protein of unknown function DUF28; KEGG: gem:GM21_0933 hypothetical protein. | 0.535 |
GM18_3391 | rpmB | GM18_3391 | GM18_3251 | KEGG: gbm:Gbem_3312 hypothetical protein. | KEGG: gem:GM21_1054 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.507 |
GM18_3391 | rpsF | GM18_3391 | GM18_2631 | KEGG: gbm:Gbem_3312 hypothetical protein. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.516 |
GM18_3392 | GM18_3391 | GM18_3392 | GM18_3391 | PFAM: protein of unknown function DUF28; KEGG: gem:GM21_0933 hypothetical protein. | KEGG: gbm:Gbem_3312 hypothetical protein. | 0.535 |
rpmB | GM18_3391 | GM18_3251 | GM18_3391 | KEGG: gem:GM21_1054 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | KEGG: gbm:Gbem_3312 hypothetical protein. | 0.507 |
rpmB | rpsF | GM18_3251 | GM18_2631 | KEGG: gem:GM21_1054 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | 0.989 |
rpsF | GM18_3391 | GM18_2631 | GM18_3391 | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | KEGG: gbm:Gbem_3312 hypothetical protein. | 0.516 |
rpsF | rpmB | GM18_2631 | GM18_3251 | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. | KEGG: gem:GM21_1054 50S ribosomal protein L28; TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. | 0.989 |