STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_3491PFAM: Uncharacterised conserved protein UCP033563; KEGG: gem:GM21_3256 hypothetical protein. (413 aa)    
Predicted Functional Partners:
GM18_3490
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: gbm:Gbem_1005 peptidylprolyl isomerase FKBP-type.
       0.680
GM18_3492
PFAM: NLP/P60 protein; Sporulation domain-containing protein; KEGG: gbm:Gbem_1003 NLP/P60 protein.
       0.527
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
       0.515
GM18_3489
KEGG: gbm:Gbem_1006 hypothetical protein.
       0.479
GM18_3917
Glutamate dehydrogenase (NAD(P)(+)); PFAM: Glu/Leu/Phe/Val dehydrogenase; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: gem:GM21_0478 glutamate dehydrogenase (NAD(P)(+)); SMART: Glu/Leu/Phe/Val dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
 
      0.411
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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