node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GM18_3663 | rplC | GM18_3663 | GM18_0832 | KEGG: gbm:Gbem_0690 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.815 |
GM18_3663 | rplD | GM18_3663 | GM18_0833 | KEGG: gbm:Gbem_0690 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.833 |
GM18_3663 | rplM | GM18_3663 | GM18_0812 | KEGG: gbm:Gbem_0690 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.822 |
GM18_3663 | rplN | GM18_3663 | GM18_0842 | KEGG: gbm:Gbem_0690 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.819 |
GM18_3663 | rplU | GM18_3663 | GM18_0140 | KEGG: gbm:Gbem_0690 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.831 |
GM18_3663 | rpmI | GM18_3663 | GM18_2217 | KEGG: gbm:Gbem_0690 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. | KEGG: gem:GM21_2228 ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.825 |
GM18_3663 | rpsC | GM18_3663 | GM18_0838 | KEGG: gbm:Gbem_0690 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.820 |
GM18_3663 | rpsE | GM18_3663 | GM18_0849 | KEGG: gbm:Gbem_0690 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.824 |
GM18_3663 | rpsG | GM18_3663 | GM18_0828 | KEGG: gbm:Gbem_0690 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.813 |
GM18_3663 | rpsO | GM18_3663 | GM18_1167 | KEGG: gbm:Gbem_0690 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.824 |
rplC | GM18_3663 | GM18_0832 | GM18_3663 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | KEGG: gbm:Gbem_0690 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase. | 0.815 |
rplC | rplD | GM18_0832 | GM18_0833 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.999 |
rplC | rplM | GM18_0832 | GM18_0812 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.998 |
rplC | rplN | GM18_0832 | GM18_0842 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. | 0.998 |
rplC | rplU | GM18_0832 | GM18_0140 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.988 |
rplC | rpmI | GM18_0832 | GM18_2217 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | KEGG: gem:GM21_2228 ribosomal protein L35; TIGRFAM: ribosomal protein L35; PFAM: Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family. | 0.987 |
rplC | rpsC | GM18_0832 | GM18_0838 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.997 |
rplC | rpsE | GM18_0832 | GM18_0849 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.997 |
rplC | rpsG | GM18_0832 | GM18_0828 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. | 0.995 |
rplC | rpsO | GM18_0832 | GM18_1167 | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.991 |