STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_3739KEGG: gbm:Gbem_0614 nitrite and sulphite reductase 4Fe-4S region; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein. (228 aa)    
Predicted Functional Partners:
GM18_0139
PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: gem:GM21_0144 Rieske (2Fe-2S) domain protein.
  
 
 0.966
GM18_1794
KEGG: gsu:GSU0794 pyridine nucleotide-disulfide oxidoreductase/rhodanese domain-containing protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; Rhodanese domain protein; SMART: Rhodanese domain protein.
  
 0.929
GM18_2067
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gem:GM21_2048 rubredoxin-type Fe(Cys)4 protein.
  
 
 0.923
GM18_3617
PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: gem:GM21_0750 rubredoxin-type Fe(Cys)4 protein.
  
 
 0.923
GM18_2457
TIGRFAM: nitrate reductase, alpha subunit; KEGG: gme:Gmet_0329 nitrate reductase subunit alpha; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 
 0.904
GM18_3971
KEGG: gem:GM21_0409 uroporphyrin-III C-methyltransferase; TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrinogen III synthase HEM4; Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase.
  
 0.841
GM18_2458
KEGG: gme:Gmet_0330 respiratory nitrate reductase beta subunit; TIGRFAM: nitrate reductase, beta subunit.
  
 
 0.786
GM18_0308
PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: gem:GM21_0256 nitrite and sulphite reductase 4Fe-4S region.
 
   
 0.730
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.639
hcp-2
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O.
  
  
 0.639
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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