STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_3834KEGG: gbm:Gbem_3623 hypothetical protein. (167 aa)    
Predicted Functional Partners:
GM18_3836
PFAM: ABC-3 protein; iron dependent repressor; KEGG: gbm:Gbem_3621 ABC-3 protein.
       0.818
GM18_3835
KEGG: gbm:Gbem_3622 ABC transporter related protein; PFAM: ABC transporter related; SMART: AAA ATPase.
       0.791
GM18_3833
PFAM: periplasmic solute binding protein; KEGG: gbm:Gbem_3624 periplasmic solute binding protein; Belongs to the bacterial solute-binding protein 9 family.
       0.748
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.