STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM18_4063PFAM: AMP-dependent synthetase and ligase; KEGG: ppd:Ppro_0910 coenzyme F390 synthetase-like protein. (436 aa)    
Predicted Functional Partners:
GM18_2062
Phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 
0.933
GM18_2054
Phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
  
 
0.926
GM18_2420
PFAM: thioesterase superfamily protein; KEGG: gem:GM21_1689 thioesterase superfamily protein.
  
 
 0.910
GM18_4332
PFAM: thioesterase superfamily protein; KEGG: gbm:Gbem_3898 thioesterase superfamily protein.
  
 
 0.910
GM18_4064
KEGG: pca:Pcar_2662 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase.
 
     0.886
GM18_4059
Exporter; KEGG: pca:Pcar_2657 exporter.
 
     0.882
GM18_4060
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
    0.873
acpP-2
Phosphopantetheine-binding protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
 
   
 0.872
GM18_4061
PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: pca:Pcar_2659 3-hydroxylacyl-(acyl carrier protein) dehydratase.
 
     0.838
GM18_4051
PFAM: phosphopantetheine-binding; KEGG: pca:Pcar_2651 acyl-carrier protein.
 
   
 0.833
Your Current Organism:
Geobacter sp. M18
NCBI taxonomy Id: 443143
Other names: G. sp. M18
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