STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_0095TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: gbm:Gbem_0114 heavy metal translocating P-type ATPase. (735 aa)    
Predicted Functional Partners:
GM21_2052
KEGG: gbm:Gbem_2170 copper-translocating P-type ATPase; TIGRFAM: copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; YHS domain protein; Haloacid dehalogenase domain protein hydrolase; SMART: TRASH domain protein.
 
 
0.932
GM21_0096
KEGG: gbm:Gbem_0115 hypothetical protein.
 
   
 0.819
GM21_0101
PFAM: cytochrome C oxidase mono-heme subunit/FixO; KEGG: gbm:Gbem_0120 cytochrome c oxidase mono-heme subunit/FixO.
 
   
 0.569
GM21_0097
KEGG: gbm:Gbem_0116 hypothetical protein.
     
 0.568
GM21_0102
PFAM: cytochrome c oxidase subunit I; KEGG: gbm:Gbem_0121 cytochrome c oxidase subunit I.
 
   
 0.557
GM21_0098
KEGG: gbm:Gbem_0117 hypothetical protein.
       0.547
GM21_0099
KEGG: gbm:Gbem_0118 hypothetical protein.
       0.547
GM21_0100
KEGG: gbm:Gbem_0119 hypothetical protein.
       0.547
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
 
 
 0.486
GM21_1226
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.474
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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