STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_1091KEGG: gbm:Gbem_3172 hypothetical protein. (171 aa)    
Predicted Functional Partners:
GM21_2997
PFAM: type II secretion system protein G; KEGG: gbm:Gbem_1286 type II secretion system protein G.
 
  
0.931
GM21_2998
KEGG: gbm:Gbem_1285 hypothetical protein.
 
  
  0.929
GM21_0605
TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; KEGG: gbm:Gbem_0592 general secretion pathway protein G.
  
  
 
0.924
GM21_0601
PFAM: General secretion pathway protein K; KEGG: gbm:Gbem_0588 general secretion pathway protein K.
 
 
 0.902
GM21_0602
KEGG: gbm:Gbem_0589 N-terminal methylation protein.
  
 
 0.823
GM21_2684
Prepilin peptidase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.653
GM21_0607
TIGRFAM: general secretion pathway protein F; PFAM: type II secretion system protein; KEGG: gbm:Gbem_0593 general secretion pathway protein F.
 
  
 0.641
GM21_1633
PFAM: type II secretion system protein; KEGG: gbm:Gbem_2593 type II secretion system protein.
 
  
 0.633
GM21_1090
KEGG: gbm:Gbem_3173 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; GAF domain protein; histidine kinase HAMP region domain protein; SMART: metal-dependent phosphohydrolase HD region; GAF domain protein; histidine kinase HAMP region domain protein.
       0.631
GM21_1164
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; beta-lactamase domain protein; KEGG: gbm:Gbem_3098 DNA internalization-related competence protein ComEC/Rec2.
  
  
 0.629
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.