STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_1213KEGG: gbm:Gbem_3037 hypothetical protein. (368 aa)    
Predicted Functional Partners:
GM21_1212
TIGRFAM: type VI secretion protein, VC_A0111 family; PFAM: protein of unknown function DUF1305; KEGG: gbm:Gbem_3038 type VI secretion protein, VC_A0111 family.
 
     0.842
GM21_1211
TIGRFAM: type VI secretion protein, VC_A0110 family; PFAM: protein of unknown function DUF879; KEGG: gbm:Gbem_3039 type VI secretion protein, VC_A0110 family.
 
     0.830
GM21_1210
TIGRFAM: type VI secretion system lysozyme-related protein; PFAM: GPW/gp25 family protein; KEGG: gbm:Gbem_3040 type VI secretion system lysozyme-related protein.
 
     0.799
GM21_1216
TIGRFAM: type VI secretion system Vgr family protein; Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: gbm:Gbem_3035 type VI secretion system Vgr family protein.
   
 0.799
GM21_1208
TIGRFAM: type VI secretion protein, EvpB/VC_A0108 family; PFAM: protein of unknown function DUF877; KEGG: gbm:Gbem_3042 type VI secretion protein, EvpB/VC_A0108 family.
 
     0.792
GM21_1207
TIGRFAM: type VI secretion protein, VC_A0107 family; PFAM: conserved hypothetical protein; KEGG: gbm:Gbem_3043 type VI secretion protein, VC_A0107 family.
 
  
 0.785
GM21_1214
SMART: Ankyrin; KEGG: gbm:Gbem_3036 ankyrin.
       0.773
GM21_1205
KEGG: gbm:Gbem_3045 hypothetical protein.
 
     0.757
GM21_1217
KEGG: gbm:Gbem_3034 hypothetical protein.
 
     0.747
GM21_1215
PFAM: Ankyrin; KEGG: gbm:Gbem_3036 ankyrin.
 
     0.746
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.