STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_1307PFAM: Saccharopine dehydrogenase; KEGG: gbm:Gbem_2918 saccharopine dehydrogenase. (399 aa)    
Predicted Functional Partners:
GM21_1308
Carboxynorspermidine decarboxylase; Catalyzes the decarboxylation of carboxynorspermidine and carboxyspermidine; Belongs to the Orn/Lys/Arg decarboxylase class-II family. NspC subfamily.
 
  
 0.967
GM21_1355
PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: gbm:Gbem_2859 Orn/DAP/Arg decarboxylase 2.
  
 
 0.922
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 
 0.922
GM21_1821
KEGG: gbm:Gbem_2398 lysine 2,3-aminomutase YodO family protein; TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein.
     
  0.900
speA
Arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
 
   
 0.798
GM21_1306
Transcriptional regulator, XRE family; PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: gbm:Gbem_2919 transcriptional regulator, XRE family.
       0.722
GM21_1806
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
  
  
 0.497
GM21_0557
PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: gbm:Gbem_0545 arginase/agmatinase/formiminoglutamase; Belongs to the arginase family.
    
 0.449
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
   
 
 0.415
GM21_2112
TIGRFAM: PfaD family protein; KEGG: gbm:Gbem_2106 PfaD family protein.
     
 0.401
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.