STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_1398KEGG: gbm:Gbem_2812 hypothetical protein. (85 aa)    
Predicted Functional Partners:
GM21_1397
KEGG: gbm:Gbem_2813 hypothetical protein.
       0.762
GM21_0284
PFAM: NADPH-dependent FMN reductase; KEGG: gbm:Gbem_0301 NADPH-dependent FMN reductase.
  
     0.546
GM21_1396
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gbm:Gbem_2814 short-chain dehydrogenase/reductase SDR.
       0.494
GM21_3647
KEGG: gur:Gura_1529 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein.
 
     0.464
GM21_3857
PFAM: NADPH-dependent FMN reductase; NAD(P)H dehydrogenase (quinone); KEGG: gbm:Gbem_3773 NADPH-dependent FMN reductase.
  
     0.454
GM21_1399
PFAM: protein of unknown function UPF0153; KEGG: gbm:Gbem_2811 protein of unknown function UPF0153.
       0.431
GM21_1400
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2810 response regulator receiver protein.
       0.431
hflX
GTP-binding proten HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis.
       0.414
GM21_3856
PFAM: protein of unknown function DUF1121; KEGG: gbm:Gbem_3772 protein of unknown function DUF1121.
  
     0.412
GM21_3668
Hypothetical protein.
  
     0.406
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.