Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
GM21_1732 | GM21_1733 | KEGG: geo:Geob_2244 aspartyl protease-like protein. | KEGG: gbm:Gbem_2486 hypothetical protein. | 0.403 |
GM21_1733 | GM21_1732 | KEGG: gbm:Gbem_2486 hypothetical protein. | KEGG: geo:Geob_2244 aspartyl protease-like protein. | 0.403 |
GM21_1733 | GM21_1734 | KEGG: gbm:Gbem_2486 hypothetical protein. | TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: gbm:Gbem_2485 anion transporter. | 0.645 |
GM21_1733 | GM21_1735 | KEGG: gbm:Gbem_2486 hypothetical protein. | TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_2484 transcriptional regulator, BadM/Rrf2 family. | 0.484 |
GM21_1733 | GM21_1736 | KEGG: gbm:Gbem_2486 hypothetical protein. | PFAM: PfkB domain protein; KEGG: gbm:Gbem_2483 PfkB domain protein. | 0.442 |
GM21_1734 | GM21_1733 | TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: gbm:Gbem_2485 anion transporter. | KEGG: gbm:Gbem_2486 hypothetical protein. | 0.645 |
GM21_1734 | GM21_1735 | TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: gbm:Gbem_2485 anion transporter. | TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_2484 transcriptional regulator, BadM/Rrf2 family. | 0.587 |
GM21_1734 | GM21_1736 | TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: gbm:Gbem_2485 anion transporter. | PFAM: PfkB domain protein; KEGG: gbm:Gbem_2483 PfkB domain protein. | 0.637 |
GM21_1735 | GM21_1733 | TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_2484 transcriptional regulator, BadM/Rrf2 family. | KEGG: gbm:Gbem_2486 hypothetical protein. | 0.484 |
GM21_1735 | GM21_1734 | TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_2484 transcriptional regulator, BadM/Rrf2 family. | TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: gbm:Gbem_2485 anion transporter. | 0.587 |
GM21_1735 | GM21_1736 | TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_2484 transcriptional regulator, BadM/Rrf2 family. | PFAM: PfkB domain protein; KEGG: gbm:Gbem_2483 PfkB domain protein. | 0.711 |
GM21_1736 | GM21_1733 | PFAM: PfkB domain protein; KEGG: gbm:Gbem_2483 PfkB domain protein. | KEGG: gbm:Gbem_2486 hypothetical protein. | 0.442 |
GM21_1736 | GM21_1734 | PFAM: PfkB domain protein; KEGG: gbm:Gbem_2483 PfkB domain protein. | TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; Citrate transporter; KEGG: gbm:Gbem_2485 anion transporter. | 0.637 |
GM21_1736 | GM21_1735 | PFAM: PfkB domain protein; KEGG: gbm:Gbem_2483 PfkB domain protein. | TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: gbm:Gbem_2484 transcriptional regulator, BadM/Rrf2 family. | 0.711 |