STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_1800PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: gbm:Gbem_2417 mandelate racemase/muconate lactonizing protein. (368 aa)    
Predicted Functional Partners:
GM21_1799
PFAM: protein of unknown function DUF819; KEGG: gbm:Gbem_2418 protein of unknown function DUF819.
 
     0.863
GM21_1895
PFAM: intradiol ring-cleavage dioxygenase; KEGG: sme:SM_b21380 catechol 1,2-dioxygenase.
  
  
 0.846
GM21_1801
KEGG: gbm:Gbem_2416 PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: response regulator receiver; histidine kinase A domain protein; ATP-binding region ATPase domain protein.
     
 0.683
GM21_1790
PFAM: beta-lactamase; KEGG: gbm:Gbem_2426 beta-lactamase.
 
  
 0.664
GM21_1081
PFAM: conserved hypothetical protein; KEGG: gbm:Gbem_3179 hypothetical protein.
 
    0.563
GM21_1409
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
    0.537
GM21_1388
PFAM: coenzyme A transferase; KEGG: gbm:Gbem_2824 coenzyme A transferase.
  
  
 0.471
GM21_1806
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
     
 0.440
GM21_1999
Amidohydrolase; KEGG: gbm:Gbem_2228 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein.
 
   
 0.436
GM21_2687
PFAM: beta-lactamase; KEGG: gbm:Gbem_1529 beta-lactamase.
 
  
 0.431
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.