STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_2012PFAM: major facilitator superfamily MFS_1; KEGG: gbm:Gbem_2215 major facilitator superfamily MFS_1. (413 aa)    
Predicted Functional Partners:
GM21_2011
PFAM: AMP-dependent synthetase and ligase; phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: gbm:Gbem_2216 AMP-dependent synthetase and ligase.
 
   
 0.755
GM21_2013
KEGG: gbm:Gbem_2214 hypothetical protein.
     
 0.648
GM21_2007
PFAM: heat shock protein DnaJ domain protein; KEGG: gbm:Gbem_2220 heat shock protein DnaJ domain protein.
  
     0.486
GM21_0271
KEGG: gbm:Gbem_0286 response regulator receiver protein.
  
 
 
 0.473
GM21_3372
KEGG: gbm:Gbem_0888 inhibitor of MCP methylation-like protein.
  
     0.471
GM21_1605
PFAM: secretion protein HlyD family protein; KEGG: gbm:Gbem_2630 secretion protein HlyD family protein.
 
 
 0.467
GM21_3847
TIGRFAM: flagellar basal-body rod protein FlgF; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: gbm:Gbem_3763 flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
 
 0.455
GM21_2112
TIGRFAM: PfaD family protein; KEGG: gbm:Gbem_2106 PfaD family protein.
     
 0.450
GM21_0705
KEGG: gbm:Gbem_0694 conserved repeat domain protein.
  
     0.422
GM21_1350
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: gbm:Gbem_2866 ferredoxin-dependent glutamate synthase.
     
 0.422
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.