STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_2109Sigma 54 interacting domain protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gbm:Gbem_2109 ABC transporter related protein. (226 aa)    
Predicted Functional Partners:
GM21_2026
PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_2201 protein of unknown function DUF214.
 
 0.970
GM21_2110
PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_2108 protein of unknown function DUF214.
 
  
 0.897
GM21_3549
PFAM: protein of unknown function DUF214; KEGG: geo:Geob_0062 protein of unknown function DUF214.
 
 
 0.798
GM21_0634
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
   
 
 0.792
GM21_2054
PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_2168 protein of unknown function DUF214.
 
 
 0.788
GM21_3423
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_0837 lipoprotein releasing system, transmembrane protein, LolC/E family.
 
 
 0.766
GM21_3550
PFAM: protein of unknown function DUF214; KEGG: geo:Geob_0061 protein of unknown function DUF214.
 
 
 0.748
GM21_0988
PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_3263 protein of unknown function DUF214.
  
 
 0.716
GM21_0989
PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_3262 protein of unknown function DUF214.
 
 
 0.712
GM21_3638
PFAM: protein of unknown function DUF214; KEGG: gbm:Gbem_3588 protein of unknown function DUF214.
  
 
 0.709
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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