STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_2325KEGG: gbm:Gbem_1885 hypothetical protein. (369 aa)    
Predicted Functional Partners:
GM21_2324
Arginase; TIGRFAM: arginase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: gbm:Gbem_1886 arginase; Belongs to the arginase family.
 
   
 0.796
GM21_2326
PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_1884 methyl-accepting chemotaxis sensory transducer.
       0.487
GM21_3731
PFAM: protein of unknown function DUF111; KEGG: gbm:Gbem_3626 protein of unknown function DUF111; Belongs to the LarC family.
 
     0.470
GM21_3730
PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: gbm:Gbem_3625 NCAIR mutase (PurE)-related protein-like protein.
 
     0.437
GM21_0342
KEGG: gbm:Gbem_0361 PP-loop domain protein.
 
     0.425
GM21_0488
PFAM: protein of unknown function DUF362; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: gbm:Gbem_0471 protein of unknown function DUF362.
  
     0.415
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.