STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_2329KEGG: gbm:Gbem_1881 cytochrome c family protein. (442 aa)    
Predicted Functional Partners:
GM21_0892
KEGG: gbm:Gbem_3353 hypothetical protein.
  
     0.764
GM21_0855
KEGG: gbm:Gbem_3391 hypothetical protein.
  
     0.760
GM21_0453
KEGG: gbm:Gbem_0434 hypothetical protein.
  
     0.758
GM21_2059
KEGG: gbm:Gbem_2163 hypothetical protein.
  
     0.757
GM21_1468
KEGG: gbm:Gbem_2772 hypothetical protein.
  
     0.755
GM21_0462
PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; WD40 domain protein beta Propeller; TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: gbm:Gbem_0446 tetratricopeptide TPR_2 repeat protein.
  
   
 0.754
GM21_1198
TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_3052 cytochrome c family protein.
  
     0.754
GM21_0600
TIGRFAM: general secretion pathway protein L; KEGG: gbm:Gbem_0587 general secretion pathway protein L.
  
     0.747
GM21_3542
TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_1154 cytochrome c family protein.
  
     0.746
GM21_3564
TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_1153 cytochrome c family protein.
  
     0.744
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.