STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_2538PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; KR domain protein; short-chain dehydrogenase/reductase SDR; KEGG: gbm:Gbem_1683 NAD-dependent epimerase/dehydratase. (373 aa)    
Predicted Functional Partners:
GM21_4111
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
 
 0.949
GM21_2536
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: geo:Geob_3242 alcohol dehydrogenase GroES domain protein.
 
  
 0.948
GM21_2535
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; Oxidoreductase domain; KEGG: gbm:Gbem_1686 oxidoreductase domain protein.
 
  
 0.940
GM21_0900
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
 0.934
GM21_3512
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
 0.934
GM21_2534
PFAM: glycosyl transferase group 1; KEGG: gbm:Gbem_1687 glycosyl transferase group 1.
 
  
 0.897
GM21_1754
KEGG: gbm:Gbem_2463 dTDP-4-dehydrorhamnose 3 5-epimerase and related enzymes-like protein.
  
 
 0.893
GM21_2533
KEGG: gbm:Gbem_1688 hypothetical protein.
 
    0.878
GM21_2532
KEGG: gbm:Gbem_1689 hypothetical protein.
 
    0.874
GM21_2531
KEGG: gbm:Gbem_1690 hypothetical protein.
 
    0.870
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.