STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_3071KEGG: gbm:Gbem_1203 hypothetical protein. (379 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein assembly complex, YaeT protein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.915
GM21_4083
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: gbm:Gbem_3990 ErfK/YbiS/YcfS/YnhG family protein.
  
 
 0.864
bamD
Outer membrane assembly lipoprotein YfiO; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.845
GM21_3072
KEGG: gbm:Gbem_1202 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF domain protein.
       0.776
GM21_3471
PFAM: cell surface receptor IPT/TIG domain protein; KEGG: gbm:Gbem_3409 cell surface receptor IPT/TIG domain protein.
  
   
 0.751
GM21_3542
TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_1154 cytochrome c family protein.
  
     0.736
GM21_1198
TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_3052 cytochrome c family protein.
  
     0.726
GM21_0692
KEGG: gbm:Gbem_0679 cytochrome c family protein.
  
     0.684
GM21_4022
PFAM: Rubrerythrin; KEGG: gbm:Gbem_3938 rubrerythrin.
  
     0.678
GM21_3069
Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family.
       0.671
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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