STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GM21_3207PFAM: type II secretion system protein; KEGG: gbm:Gbem_1054 type II secretion system protein. (320 aa)    
Predicted Functional Partners:
GM21_3205
KEGG: gbm:Gbem_1056 response regulator receiver protein.
 
 
 0.999
GM21_3208
PFAM: type II secretion system protein; KEGG: gbm:Gbem_1053 type II secretion system protein.
 
 0.999
GM21_3203
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: gbm:Gbem_1058 Flp pilus assembly protein CpaB.
 
 
 0.998
GM21_3206
PFAM: type II secretion system protein E; KEGG: gbm:Gbem_1055 type II secretion system protein E.
 
 
 0.998
GM21_3204
PFAM: type II and III secretion system protein; transport-associated; KEGG: gbm:Gbem_1057 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
 
 0.995
GM21_2351
TIGRFAM: P-type conjugative transfer ATPase TrbB; PFAM: type II secretion system protein E; KEGG: xau:Xaut_2878 P-type conjugative transfer ATPase TrbB.
 
  
 0.935
GM21_3209
PFAM: protein of unknown function DUF192; KEGG: gbm:Gbem_1052 protein of unknown function DUF192.
 
     0.874
GM21_1968
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: gbm:Gbem_2256 response regulator receiver protein.
  
  
 0.863
GM21_3201
PFAM: TadE family protein; KEGG: gbm:Gbem_1060 TadE family protein.
  
  
 0.847
GM21_2514
KEGG: gbm:Gbem_1708 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver.
  
    0.728
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.