STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_3447PFAM: protein of unknown function DUF6 transmembrane; KEGG: gbm:Gbem_0814 protein of unknown function DUF6 transmembrane. (308 aa)    
Predicted Functional Partners:
GM21_3446
PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; KEGG: gbm:Gbem_0815 formamidopyrimidine-DNA glycolase, H2TH DNA binding.
       0.542
GM21_3450
Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; Hpt domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; Hpt domain protein; KEGG: gbm:Gbem_0811 Hpt sensor hybrid histidine kinase.
  
   0.492
GM21_3448
KEGG: gbm:Gbem_0813 hypothetical protein.
       0.476
GM21_3449
KEGG: gbm:Gbem_0812 metal dependent phosphohydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: Metal-dependent hydrolase HDOD; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
       0.476
GM21_3276
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gbm:Gbem_0984 polar amino acid ABC transporter, inner membrane subunit.
 
    0.474
GM21_2286
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gbm:Gbem_1931 polar amino acid ABC transporter, inner membrane subunit.
 
    0.432
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.