STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_3866PFAM: protein of unknown function DUF47; KEGG: gbm:Gbem_3782 protein of unknown function DUF47. (205 aa)    
Predicted Functional Partners:
GM21_3865
PFAM: phosphate transporter; KEGG: gbm:Gbem_3781 phosphate transporter.
 
  
 0.992
rpmB
TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: gbm:Gbem_3209 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
  
    0.538
GM21_2506
Phosphate uptake regulator, PhoU; Plays a role in the regulation of phosphate uptake.
    
 0.529
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
  
    0.505
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
   
    0.502
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
   
    0.499
uppP-2
Undecaprenol kinase; Catalyzes the dephosphorylation of undecaprenyl diphosphate (UPP). Confers resistance to bacitracin; Belongs to the UppP family.
       0.499
GM21_0168
PFAM: beta-lactamase domain protein; flavodoxin/nitric oxide synthase; NADPH-dependent FMN reductase; KEGG: gbm:Gbem_0186 beta-lactamase domain protein.
   
    0.478
GM21_1926
Chromosome segregation and condensation protein ScpA; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
    0.472
asnS
TIGRFAM: asparaginyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; KEGG: gbm:Gbem_0882 asparaginyl-tRNA synthetase.
  
    0.436
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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