STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_3981PFAM: regulatory protein TetR; KEGG: gbm:Gbem_3896 transcriptional regulator, TetR family. (198 aa)    
Predicted Functional Partners:
GM21_2112
TIGRFAM: PfaD family protein; KEGG: gbm:Gbem_2106 PfaD family protein.
     
 0.522
GM21_3982
PFAM: acetyl-CoA hydrolase/transferase; KEGG: gbm:Gbem_3897 acetyl-CoA hydrolase/transferase.
       0.519
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.510
ftsZ
Cell division protein FtsZ; Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity.
   
 
 0.496
GM21_2114
PFAM: Beta-ketoacyl synthase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: gbm:Gbem_2104 beta-ketoacyl synthase; Belongs to the thiolase-like superfamily. Beta-ketoacyl-ACP synthases family.
 
   
 0.485
GM21_2514
KEGG: gbm:Gbem_1708 response regulator receiver modulated diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; GAF domain protein; response regulator receiver; SMART: EAL domain protein; GGDEF domain containing protein; response regulator receiver.
   
 
 0.466
GM21_2113
KEGG: gbm:Gbem_2105 polyketide-type polyunsaturated fatty acid synthase PfaA; TIGRFAM: polyketide-type polyunsaturated fatty acid synthase PfaA; PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR.
 
   
 0.452
GM21_3243
PAS sensor protein; KEGG: gbm:Gbem_1017 multi-sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region ATPase domain protein; response regulator receiver; PAS fold-4 domain protein; Na+/solute symporter; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; response regulator receiver; histidine kinase A domain protein; PAS domain containing protein.
   
 
 0.442
GM21_0693
PFAM: response regulator receiver; heat shock protein DnaJ domain protein; SMART: response regulator receiver; Tetratricopeptide domain protein; KEGG: gbm:Gbem_0681 response regulator receiver protein.
    
 
 0.439
GM21_2357
Putative PAS/PAC sensor protein; KEGG: sat:SYN_00875 response regulator; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; SMART: response regulator receiver; PAC repeat-containing protein; PAS domain containing protein.
   
 
 0.419
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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