STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GM21_4139KEGG: gbm:Gbem_4049 hypothetical protein. (90 aa)    
Predicted Functional Partners:
GM21_0597
KEGG: gbm:Gbem_0584 hypothetical protein.
  
   
 0.758
GM21_1198
TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_3052 cytochrome c family protein.
  
   
 0.745
GM21_0574
PFAM: biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthase L chain ATP-binding; KEGG: gbm:Gbem_0561 biotin/lipoyl attachment domain-containing protein.
  
     0.740
GM21_0173
KEGG: gbm:Gbem_0191 response regulator receiver protein.
  
     0.738
GM21_0689
KEGG: gbm:Gbem_0676 multihaem cytochrome.
  
   
 0.729
GM21_3564
TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_1153 cytochrome c family protein.
  
   
 0.723
GM21_3543
TIGRFAM: cytochrome C family protein; KEGG: gbm:Gbem_1153 cytochrome c family protein.
  
   
 0.707
GM21_2693
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; Cache type 2 domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: gbm:Gbem_1523 integral membrane sensor signal transduction histidine kinase.
  
     0.695
GM21_0535
KEGG: gbm:Gbem_0519 hypothetical protein.
  
     0.686
GM21_3358
KEGG: gbm:Gbem_0903 hypothetical protein.
  
     0.684
Your Current Organism:
Geobacter sp. M21
NCBI taxonomy Id: 443144
Other names: G. sp. M21
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.