STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM46546.1OmpA/MotB domain protein. (145 aa)    
Predicted Functional Partners:
EDM49031.1
COG1729 Uncharacterized protein conserved in bacteria.
  
 
 0.943
EDM47221.1
Patatin; COG1752 Predicted esterase of the alpha-beta hydrolase superfamily.
   
 
 0.937
EDM48942.1
COG3317 Uncharacterized lipoprotein.
   
 
 0.923
EDM48812.1
COG4775 Outer membrane protein/protective antigen OMA87.
    
 
 0.913
bamA
Outer membrane protein/protective antigen OMA87; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
 
 0.913
bamD
DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
   
 
 0.892
EDM49581.1
COG2825 Outer membrane protein.
  
 
 0.769
EDM47794.1
Hypothetical protein; COG0823 Periplasmic component of the Tol biopolymer transport system.
  
 0.716
tolB
Periplasmic component of the Tol biopolymer transport system; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 0.716
EDM48474.1
COG1652 Uncharacterized protein containing LysM domain.
  
 
  0.694
Your Current Organism:
Marinobacter algicola
NCBI taxonomy Id: 443152
Other names: M. algicola DG893, Marinobacter algicola DG893, Marinobacter algicola str. DG893, Marinobacter algicola strain DG893, Marinobacter sp. DG893
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.