Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EDM49031.1COG1729 Uncharacterized protein conserved in bacteria. (934 aa)    
Predicted Functional Partners:
EDM49032.1
COG0457 FOG: TPR repeat.
 
  
 0.956
EDM49029.1
Helix-turn-helix, AraC type; COG0050 GTPases - translation elongation factors.
 
     0.945
EDM49034.1
COG0811 Biopolymer transport proteins.
 
  
 0.937
EDM49035.1
COG0848 Biopolymer transport protein.
 
  
 0.937
EDM49036.1
Sigma-70 factor.
 
  
 0.937
EDM49037.1
Hypothetical protein.
 
   
 0.930
EDM47794.1
Hypothetical protein; COG0823 Periplasmic component of the Tol biopolymer transport system.
 
  
 0.889
EDM47799.1
Hypothetical protein.
 
 
 
 0.882
EDM48812.1
COG4775 Outer membrane protein/protective antigen OMA87.
 
 
 0.872
EDM46546.1
OmpA/MotB domain protein.
  
 
 0.851
Your Current Organism:
Marinobacter algicola
NCBI taxonomy Id: 443152
Other names: M. algicola DG893, Marinobacter algicola DG893, Marinobacter algicola str. DG893, Marinobacter algicola strain DG893, Marinobacter sp. DG893
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