STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM49093.1Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases). (266 aa)    
Predicted Functional Partners:
EDM49094.1
Transcriptional regulator, putative.
 
   
 0.954
EDM49092.1
Amine oxidase; COG2907 Predicted NAD/FAD-binding protein.
 
   
 0.923
EDM49091.1
Hypothetical protein.
 
  
 0.918
EDM49089.1
Hypothetical protein; COG0477 Permeases of the major facilitator superfamily.
 
   
 0.910
EDM49090.1
COG2230 Cyclopropane fatty acid synthase and related methyltransferases.
 
     0.885
EDM49095.1
COG1398 Fatty-acid desaturase.
   
 0.840
EDM46866.1
COG0067 Glutamate synthase domain 1.
    
  0.827
EDM49006.1
Beta-ketoacyl synthase; COG1020 Non-ribosomal peptide synthetase modules and related proteins.
   
 0.789
EDM49088.1
Hypothetical protein.
       0.789
EDM48506.1
Lipoprotein, putative; COG1788 Acyl CoA:acetate/3-ketoacid CoA transferase, alpha subunit.
  
    0.733
Your Current Organism:
Marinobacter algicola
NCBI taxonomy Id: 443152
Other names: M. algicola DG893, Marinobacter algicola DG893, Marinobacter algicola str. DG893, Marinobacter algicola strain DG893, Marinobacter sp. DG893
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.