STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM49164.1Hypothetical protein. (120 aa)    
Predicted Functional Partners:
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.859
EDM45796.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.734
EDM47057.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.734
EDM49039.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.734
EDM49263.1
Putative AMP-binding enzyme; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.734
EDM49675.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.734
EDM48294.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.734
EDM46957.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.734
EDM46070.1
COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.734
EDM47675.1
DitJ-like CoA ligase (AMP forming); Possibly related to diterpenoid metabolism; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II.
    
  0.734
Your Current Organism:
Marinobacter algicola
NCBI taxonomy Id: 443152
Other names: M. algicola DG893, Marinobacter algicola DG893, Marinobacter algicola str. DG893, Marinobacter algicola strain DG893, Marinobacter sp. DG893
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.