STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM49272.1Hypothetical protein; COG1643 HrpA-like helicases. (279 aa)    
Predicted Functional Partners:
EDM49269.1
Hypothetical protein.
       0.809
EDM49270.1
Hypothetical protein; COG0840 Methyl-accepting chemotaxis protein.
       0.809
EDM49271.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
       0.809
EDM49273.1
Hypothetical protein.
       0.559
EDM49268.1
Short-chain dehydrogenase/reductase SDR; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases).
       0.448
EDM49265.1
Putative acyl-CoA dehydrogenase.
       0.445
EDM49266.1
COG3173 Predicted aminoglycoside phosphotransferase.
       0.445
EDM49267.1
acyl-CoA dehydrogenase, putative; COG1960 Acyl-CoA dehydrogenases.
       0.445
Your Current Organism:
Marinobacter algicola
NCBI taxonomy Id: 443152
Other names: M. algicola DG893, Marinobacter algicola DG893, Marinobacter algicola str. DG893, Marinobacter algicola strain DG893, Marinobacter sp. DG893
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.