STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM49673.1COG3687 Predicted metal-dependent hydrolase. (277 aa)    
Predicted Functional Partners:
EDM49671.1
Hypothetical protein.
 
     0.617
EDM46637.1
Short chain dehydrogenase; COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.590
EDM46860.1
COG1680 Beta-lactamase class C and other penicillin binding proteins.
  
     0.584
EDM49658.1
Transcriptional regulator, AraC family protein; COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.568
EDM45807.1
COG2207 AraC-type DNA-binding domain-containing proteins.
  
     0.565
EDM48879.1
Monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.
 
     0.553
EDM47722.1
Short chain dehydrogenase; COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
  
     0.536
EDM48860.1
Hypothetical protein.
  
     0.531
EDM45797.1
Probable flavin-containing monooxygenase; COG2072 Predicted flavoprotein involved in K+ transport.
 
     0.530
EDM48565.1
Monooxygenase, flavin-binding family protein; COG2072 Predicted flavoprotein involved in K+ transport.
 
     0.523
Your Current Organism:
Marinobacter algicola
NCBI taxonomy Id: 443152
Other names: M. algicola DG893, Marinobacter algicola DG893, Marinobacter algicola str. DG893, Marinobacter algicola strain DG893, Marinobacter sp. DG893
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.