STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM46984.1COG1233 Phytoene dehydrogenase and related proteins. (541 aa)    
Predicted Functional Partners:
EDM46983.1
COG1309 Transcriptional regulator.
    
 0.834
EDM49104.1
Dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.711
EDM47350.1
Geranylgeranyl reductase; COG0644 Dehydrogenases (flavoproteins).
  
 
 0.694
ubiA
4-hydroxybenzoate octaprenyltransferase; Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3-octaprenyl-4-hydroxybenzoate.
  
 
 0.690
EDM46909.1
Geranyltranstransferase; COG0142 Geranylgeranyl pyrophosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 
 0.682
EDM47249.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
  
 0.674
EDM48702.1
Hypothetical protein; COG5621 Predicted secreted hydrolase.
  
 
 0.649
EDM46982.1
COG3182 Uncharacterized iron-regulated membrane protein.
       0.598
dnaK
Molecular chaperone; Acts as a chaperone; Belongs to the heat shock protein 70 family.
     
 0.569
EDM47318.1
COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily).
 
  
 0.560
Your Current Organism:
Marinobacter algicola
NCBI taxonomy Id: 443152
Other names: M. algicola DG893, Marinobacter algicola DG893, Marinobacter algicola str. DG893, Marinobacter algicola strain DG893, Marinobacter sp. DG893
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.