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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM48660.1Transcriptional regulator, IclR family protein; COG1414 Transcriptional regulator. (269 aa)    
Predicted Functional Partners:
EDM48648.1
Transcriptional regulator, IclR family protein; COG1414 Transcriptional regulator.
 
     0.763
EDM48033.1
COG1414 Transcriptional regulator.
  
     0.744
EDM47651.1
Transcriptional regulator, IclR family protein; COG1414 Transcriptional regulator.
  
     0.729
EDM46056.1
Transcriptional regulator, IclR family protein; COG1414 Transcriptional regulator.
  
     0.724
EDM48195.1
Kinase autophosphorylation inhibitor KipI; COG2049 Allophanate hydrolase subunit 1.
  
    0.643
EDM48196.1
Regulator of kinase autophosphorylation inhibitor; COG1984 Allophanate hydrolase subunit 2.
  
    0.619
EDM48659.1
COG3047 Outer membrane protein W.
 
     0.589
EDM46491.1
COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits.
    
  0.517
EDM48654.1
COG0683 ABC-type branched-chain amino acid transport systems, periplasmic component.
 
     0.512
EDM48656.1
COG4177 ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.468
Your Current Organism:
Marinobacter algicola
NCBI taxonomy Id: 443152
Other names: M. algicola DG893, Marinobacter algicola DG893, Marinobacter algicola str. DG893, Marinobacter algicola strain DG893, Marinobacter sp. DG893
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