STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM48702.1Hypothetical protein; COG5621 Predicted secreted hydrolase. (366 aa)    
Predicted Functional Partners:
EDM48703.1
Hypothetical protein; COG0577 ABC-type antimicrobial peptide transport system, permease component.
 
  
 0.981
EDM48704.1
ABC transporter, ATPase subunit; COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component.
     
 0.796
EDM46984.1
COG1233 Phytoene dehydrogenase and related proteins.
  
 
 0.649
EDM47142.1
COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.
  
  
 0.630
EDM47172.1
COG3127 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, permease component.
  
  
 0.630
EDM47350.1
Geranylgeranyl reductase; COG0644 Dehydrogenases (flavoproteins).
  
 
 0.495
EDM46943.1
Ubiquinol-cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
     
 0.486
EDM48997.1
COG1215 Glycosyltransferases, probably involved in cell wall biogenesis.
  
  
 0.482
EDM48705.1
Diguanylate cyclase; COG2199 FOG: GGDEF domain.
       0.465
EDM49104.1
Dehydrogenase; Accepts electrons from ETF and reduces ubiquinone.
   
 
 0.403
Your Current Organism:
Marinobacter algicola
NCBI taxonomy Id: 443152
Other names: M. algicola DG893, Marinobacter algicola DG893, Marinobacter algicola str. DG893, Marinobacter algicola strain DG893, Marinobacter sp. DG893
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.