STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM48739.1Putative transcriptional regulator. (173 aa)    
Predicted Functional Partners:
EDM49713.1
COG3210 Large exoproteins involved in heme utilization or adhesion.
  
     0.721
EDM46761.1
Hypothetical protein.
  
     0.719
EDM49271.1
Hypothetical protein; COG1196 Chromosome segregation ATPases.
  
     0.712
EDM46897.1
COG1388 FOG: LysM repeat.
  
     0.693
EDM49311.1
Hypothetical protein; COG0517 FOG: CBS domain.
  
     0.668
EDM45904.1
Probable membrane protein YdgA-like protein; COG5339 Uncharacterized protein conserved in bacteria.
  
     0.642
EDM49139.1
Hypothetical protein.
  
     0.635
EDM49545.1
Hypothetical protein.
  
     0.617
EDM46612.1
OmpA domain protein transmembrane region-containing protein; COG2885 Outer membrane protein and related peptidoglycan-associated (lipo)proteins.
  
     0.599
EDM48117.1
Hypothetical protein.
  
     0.588
Your Current Organism:
Marinobacter algicola
NCBI taxonomy Id: 443152
Other names: M. algicola DG893, Marinobacter algicola DG893, Marinobacter algicola str. DG893, Marinobacter algicola strain DG893, Marinobacter sp. DG893
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