STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EDM47648.1TRAP transporter, DctP family, putative; COG4663 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component. (260 aa)    
Predicted Functional Partners:
EDM47646.1
TRAP transporter, DctM subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
 
  0.989
EDM47647.1
TRAP transporter, DctQ family protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
 
  0.989
EDM48820.1
COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.778
EDM47347.1
COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.778
EDM48819.1
COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.777
EDM47348.1
Hypothetical protein; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.777
EDM46022.1
COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.777
EDM46021.1
COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.775
EDM47671.1
TRAP transporter, DctQ family protein; COG4665 TRAP-type mannitol/chloroaromatic compound transport system, small permease component.
 
    0.771
EDM47672.1
TRAP transporter, DctM subunit; COG4664 TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
 
    0.770
Your Current Organism:
Marinobacter algicola
NCBI taxonomy Id: 443152
Other names: M. algicola DG893, Marinobacter algicola DG893, Marinobacter algicola str. DG893, Marinobacter algicola strain DG893, Marinobacter sp. DG893
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.